|
|
|
| e-Pub |
Previous | 
Home
Section: Partnerships and Cooperations
International Initiatives
Inria Associate Teams
Magnome participates in the CARNAGE associated team, coordinated by AMIB, with the Russian Academy of Sciences.
Inria International Partners
Declared Inria International Partners
AMAVI
-
Title: Combinatorics and Algorithms for the Genomic sequences
-
International Partner (Institution - Laboratory - Researcher):
-
VIGG and AMIB teams has a more than 12 years long collaboration on sequence analysis. The two groups aim at identifying DNA motifs for a functional annotation, with a special focus on conserved regulatory regions. In the current 3-years project CARNAGE, our collaboration, that includes Inrai-team Magnome , is oriented towards new trends that arise from Next Generation Sequencing data. Combinatorial issues in genome assembly are addressed. RNA structure and interactions are also studied.
The toolkit is pattern matching algorithms and analytic combinatorics, leading to common software.
Informal International Partners
Magnome collaborates with Rodrigo Assar of the Universidad Andrès Bello, and Nicolás Loira and Alessandro Maass of the Center for Genomic Regulation, in Santiago de Chile (Chile).
Participation in other International Programs
Magnome and the VIGG of the Russian Academy of Sciences (RAS) in Moscow are partners in a project funded by the CNRS and the RAS entitle “Séquençage profond de organismes biotechnologiques : des régulons à l'adaptation ”.